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Abstract In the (special) smoothing spline problem one considers a variational problem with a quadratic data fidelity penalty and Laplacian regularization. Higher order regularity can be obtained via replacing the Laplacian regulariser with a poly-Laplacian regulariser. The methodology is readily adapted to graphs and here we consider graph poly-Laplacian regularization in a fully supervised, non-parametric, noise corrupted, regression problem. In particular, given a dataset$$\{x_i\}_{i=1}^n$$ ${\left\{x_i\right\}}_{i=1}^n$and a set of noisy labels$$\{y_i\}_{i=1}^n\subset \mathbb {R}$$ ${\left\{y_i\right\}}_{i=1}^n\subset R$we let$$u_n{:}\{x_i\}_{i=1}^n\rightarrow \mathbb {R}$$ $u_n:{\left\{x_i\right\}}_{i=1}^n\to R$be the minimizer of an energy which consists of a data fidelity term and an appropriately scaled graph poly-Laplacian term. When$$y_i = g(x_i)+\xi _i$$ $y_i=g\left(x_i\right)+{\xi }_i$, for iid noise$$\xi _i$$ ${\xi }_i$, and using the geometric random graph, we identify (with high probability) the rate of convergence of$$u_n$$ $u_n$togin the large data limit$$n\rightarrow \infty $$ $n\to \infty$. Furthermore, our rate is close to the known rate of convergence in the usual smoothing spline model.